3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04234

Details:

PFam ID : PF04234

PFam Domain Description : CopC domain

Number of Sequence in 50% Dataset : 166

Number of Sequence in Full Dataset : 499

Average sequence length: 95.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04234	C3II53_BACTU_4_47	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04234	D7BCE9_MEISD_19_140	100

Sequence based PCA Plot of the family - PF04234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay