3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04231

Details:

PFam ID : PF04231

PFam Domain Description : Endonuclease I

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 396

Average sequence length: 207.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04231	Q0ACY2_NITEC_1_53	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04231	C1E047_MICSR_42_289	100

Sequence based PCA Plot of the family - PF04231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=63 Length=14
Motif3 Start=1 Length=11
Motif4 Start=85 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay