3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04229

Details:

PFam ID : PF04229

PFam Domain Description : Uncharacterised protein family (UPF0157)

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 468

Average sequence length: 158.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04229	Q65F03_BACLD_2_111	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04229	D7VTG7_9SPHI_1_190	100

Sequence based PCA Plot of the family - PF04229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=99 Length=8
Motif2 Start=48 Length=8
Motif3 Start=36 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay