3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04226

Details:

PFam ID : PF04226

PFam Domain Description : Transglycosylase associated protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 826

Average sequence length: 48.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04226	A9BWZ2_DELAS_33_87	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04226	D8DTL3_PREBR_38_87	99.3

Sequence based PCA Plot of the family - PF04226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay