3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04225

Details:

PFam ID : PF04225

PFam Domain Description : Opacity-associated protein A LysM-like domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 253

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04225	D6GLM2_9ENTR_138_177	72

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04225	D3S984_THISK_135_222	100

Sequence based PCA Plot of the family - PF04225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=45 Length=8
Motif2 Start=10 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay