3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04223

Details:

PFam ID : PF04223

PFam Domain Description : Citrate lyase, alpha subunit (CitF)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 139

Average sequence length: 427.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04223	D1Y2T2_9BACT_1_42	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04223	A8LJE7_DINSH_54_515	100

Sequence based PCA Plot of the family - PF04223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay