3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04220

Details:

PFam ID : PF04220

PFam Domain Description : Der GTPase activator (YihI)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 118

Average sequence length: 163.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04220	A3GTP0_VIBCH_5_95	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04220	Q47UQ8_COLP3_2_197	100

Sequence based PCA Plot of the family - PF04220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=162 Length=11
Motif2 Start=29 Length=8
Motif3 Start=129 Length=8
Motif4 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay