3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04218

Details:

PFam ID : PF04218

PFam Domain Description : CENP-B N-terminal DNA-binding domain

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 124

Average sequence length: 50.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04218	B4LH24_DROVI_33_86	25.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04218	A8NPL7_BRUMA_92_146	100

Sequence based PCA Plot of the family - PF04218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay