3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04213

Details:

PFam ID : PF04213

PFam Domain Description : Htaa

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 135

Average sequence length: 160.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04213	E4EW85_PROAC_200_297	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04213	D3F6M3_CONWI_789_977	100

Sequence based PCA Plot of the family - PF04213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=173 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay