3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04212

Details:

PFam ID : PF04212

PFam Domain Description : MIT (microtubule interacting and transport) domain

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 370

Average sequence length: 68.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04212	A7I5S8_METB6_6_166	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04212	Q4UC87_THEAN_4_82	100

Sequence based PCA Plot of the family - PF04212 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay