3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04211

Details:

PFam ID : PF04211

PFam Domain Description : Tetrahydromethanopterin S-methyltransferase, subunit C

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 39

Average sequence length: 244.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04211	A7I5S8_METB6_6_166	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04211	B8GE96_METPE_2_278	100

Sequence based PCA Plot of the family - PF04211 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay