3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04209

Details:

PFam ID : PF04209

PFam Domain Description : homogentisate 1,2-dioxygenase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 426

Average sequence length: 375.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04209	Q0W337_UNCMA_1_77	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04209	C0SIH8_PARBP_112_372	100

Sequence based PCA Plot of the family - PF04209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay