3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04208

Details:

PFam ID : PF04208

PFam Domain Description : Tetrahydromethanopterin S-methyltransferase, subunit A

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 58

Average sequence length: 167.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04208	Q0W337_UNCMA_1_77	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04208	A3ETW3_9BACT_102_273	100

Sequence based PCA Plot of the family - PF04208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=152 Length=8
Motif3 Start=53 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay