3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04206

Details:

PFam ID : PF04206

PFam Domain Description : Tetrahydromethanopterin S-methyltransferase, subunit E

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 31

Average sequence length: 263.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04206	D6XWG9_BACIE_1_34	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04206	MTRE_METFE_8_256	100

Sequence based PCA Plot of the family - PF04206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=18
Motif2 Start=222 Length=8
Motif3 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay