3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04204

Details:

PFam ID : PF04204

PFam Domain Description : Homoserine O-succinyltransferase

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 435

Average sequence length: 288.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04204	A1YSD5_STRSU_1_62	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04204	Q71IJ9_LACDL_2_54	99.7

Sequence based PCA Plot of the family - PF04204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=11
Motif2 Start=14 Length=8
Motif3 Start=1 Length=11
Motif4 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay