3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04202

Details:

PFam ID : PF04202

PFam Domain Description : Foot protein 3

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 20

Average sequence length: 67.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04202	A7SI28_NEMVE_1_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04202	Q2VPV7_MYTCA_1_64	100

Sequence based PCA Plot of the family - PF04202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay