3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04201

Details:

PFam ID : PF04201

PFam Domain Description : Tumour protein D52 family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 93

Average sequence length: 156.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04201	A7SI28_NEMVE_1_81	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04201	D3PI53_9MAXI_24_180	100

Sequence based PCA Plot of the family - PF04201 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay