3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04196

Details:

PFam ID : PF04196

PFam Domain Description : Bunyavirus RNA dependent RNA polymerase

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 93

Average sequence length: 407.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04196	Q76M60_9VIRU_829_1668	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04196	Q2Y0K1_9VIRU_2042_2778	100

Sequence based PCA Plot of the family - PF04196 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=158 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay