3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04192

Details:

PFam ID : PF04192

PFam Domain Description : Utp21 specific WD40 associated putative domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 175

Average sequence length: 223.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04192	C1FHS3_MICSR_676_784	88

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04192	B7FRH6_PHATC_947_1231	100

Sequence based PCA Plot of the family - PF04192 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=208 Length=8
Motif2 Start=63 Length=8
Motif3 Start=40 Length=8
Motif4 Start=257 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay