3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04189

Details:

PFam ID : PF04189

PFam Domain Description : Gcd10p family

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 168

Average sequence length: 282.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04189	A8B9U9_GIAIC_108_256	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04189	A6RQ20_BOTFB_47_425	100

Sequence based PCA Plot of the family - PF04189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=257 Length=8
Motif2 Start=163 Length=18
Motif3 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay