3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04188

Details:

PFam ID : PF04188

PFam Domain Description : Mannosyltransferase (PIG-V))

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 324

Average sequence length: 275.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04188	E0VRI4_PEDHC_14_504	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04188	A5DNG1_PICGU_333_419	100

Sequence based PCA Plot of the family - PF04188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=214 Length=8
Motif4 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay