3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04186

Details:

PFam ID : PF04186

PFam Domain Description : FxsA cytoplasmic membrane protein

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 486

Average sequence length: 120.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04186	Q6S9A0_MYCTU_1_91	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04186	E2MXL5_9CORY_4_144	100

Sequence based PCA Plot of the family - PF04186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay