3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04183

Details:

PFam ID : PF04183

PFam Domain Description : IucA / IucC family

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 512

Average sequence length: 235.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04183	Q4P4F7_USTMA_163_233	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04183	D2RXU9_HALTV_231_507	100

Sequence based PCA Plot of the family - PF04183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=147 Length=8
Motif3 Start=245 Length=8
Motif4 Start=15 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay