3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04182

Details:

PFam ID : PF04182

PFam Domain Description : B-block binding subunit of TFIIIC

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 137

Average sequence length: 74.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04182	Q4P4F7_USTMA_163_233	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04182	B7QH00_IXOSC_169_246	100

Sequence based PCA Plot of the family - PF04182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay