3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04180

Details:

PFam ID : PF04180

PFam Domain Description : Low temperature viability protein

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 131

Average sequence length: 360.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04180	E4X6E6_OIKDI_17_489	71.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04180	E6ZLA8_9BASI_14_457	100

Sequence based PCA Plot of the family - PF04180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=19
Motif2 Start=114 Length=8
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay