3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04179

Details:

PFam ID : PF04179

PFam Domain Description : Initiator tRNA phosphoribosyl transferase

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 109

Average sequence length: 349.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04179	A3GEW1_PICST_17_537	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04179	A3GEW1_PICST_17_537	100

Sequence based PCA Plot of the family - PF04179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=64 Length=11
Motif2 Start=507 Length=14
Motif3 Start=37 Length=8
Motif4 Start=200 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay