3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04178

Details:

PFam ID : PF04178

PFam Domain Description : Got1/Sft2-like family

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 428

Average sequence length: 113.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04178	D2UZC4_NAEGR_48_421	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04178	B0E583_LACBS_230_327	96.0

Sequence based PCA Plot of the family - PF04178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay