3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04177

Details:

PFam ID : PF04177

PFam Domain Description : TAP42-like family

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 194

Average sequence length: 302.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04177	D2UZC4_NAEGR_48_421	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04177	F0XHZ1_9PEZI_27_423	100

Sequence based PCA Plot of the family - PF04177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8
Motif4 Start=224 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay