3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04176

Details:

PFam ID : PF04176

PFam Domain Description : TIP41-like family

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 142

Average sequence length: 172.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04176	A0CK65_PARTE_87_298	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04176	E1ZAB7_9CHLO_62_298	100

Sequence based PCA Plot of the family - PF04176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=189 Length=8
Motif2 Start=162 Length=8
Motif3 Start=21 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay