3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04174

Details:

PFam ID : PF04174

PFam Domain Description : A circularly permuted ATPgrasp

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 514

Average sequence length: 327.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04174	A4YDP9_METS5_12_175	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04174	Q3A040_PELCD_19_317	100

Sequence based PCA Plot of the family - PF04174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=258 Length=8
Motif2 Start=180 Length=8
Motif3 Start=238 Length=8
Motif4 Start=166 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay