3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04173

Details:

PFam ID : PF04173

PFam Domain Description : TQO small subunit DoxD

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 48

Average sequence length: 148.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04173	A4YDP9_METS5_12_175	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04173	A4YDP9_METS5_12_175	100

Sequence based PCA Plot of the family - PF04173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay