3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04172

Details:

PFam ID : PF04172

PFam Domain Description : LrgB-like family

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 659

Average sequence length: 206.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04172	A3M3E7_ACIBT_62_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04172	E3QYN6_COLGM_367_618	100

Sequence based PCA Plot of the family - PF04172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=33
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay