3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04170

Details:

PFam ID : PF04170

PFam Domain Description : NlpE N-terminal domain

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 193

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04170	A3M3E7_ACIBT_62_105	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04170	A5FC53_FLAJ1_49_153	100

Sequence based PCA Plot of the family - PF04170 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay