3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04168

Details:

PFam ID : PF04168

PFam Domain Description : A predicted alpha-helical domain with a conserved ER motif.

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 504

Average sequence length: 295.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04168	A6CNA9_9BACI_74_134	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04168	D0LCP0_GORB4_548_894	100

Sequence based PCA Plot of the family - PF04168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=88 Length=14
Motif2 Start=7 Length=8
Motif3 Start=149 Length=17
Motif4 Start=226 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay