3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04162

Details:

PFam ID : PF04162

PFam Domain Description : Gyrovirus capsid protein (VP1)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 5

Average sequence length: 240.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04162	B2REK1_9CIRC_1_449	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04162	B2REK1_9CIRC_1_449	100

Sequence based PCA Plot of the family - PF04162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=126 Length=8
Motif3 Start=145 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay