3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04156

Details:

PFam ID : PF04156

PFam Domain Description : IncA protein

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 79

Average sequence length: 182.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04156	Q9F7L2_CHLTR_23_174	14.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04156	E5AIR2_CHLPS_27_198	91.0

Sequence based PCA Plot of the family - PF04156 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay