3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04155

Details:

PFam ID : PF04155

PFam Domain Description : Ground-like domain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 110

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04155	E1GMA3_LOALO_86_162	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04155	A8XC12_CAEBR_582_667	100

Sequence based PCA Plot of the family - PF04155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=48 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay