3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04153

Details:

PFam ID : PF04153

PFam Domain Description : NOT2 / NOT3 / NOT5 family

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 297

Average sequence length: 125.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04153	A2FBH3_TRIVA_21_191	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04153	A2FBH3_TRIVA_21_191	100

Sequence based PCA Plot of the family - PF04153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=129 Length=8
Motif4 Start=96 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay