3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04152

Details:

PFam ID : PF04152

PFam Domain Description : Mre11 DNA-binding presumed domain

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 155

Average sequence length: 164.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04152	Q4U965_THEAN_569_738	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04152	C4QFN2_SCHMA_292_491	100

Sequence based PCA Plot of the family - PF04152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=127 Length=8
Motif3 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay