3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04151

Details:

PFam ID : PF04151

PFam Domain Description : Bacterial pre-peptidase C-terminal domain

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 748

Average sequence length: 71.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04151	C7MXE1_SACVD_10_85	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04151	B1KKE8_SHEWM_902_974	90.6

Sequence based PCA Plot of the family - PF04151 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=43 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay