3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04149

Details:

PFam ID : PF04149

PFam Domain Description : Domain of unknown function (DUF397)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 924

Average sequence length: 53.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04149	C7MXE1_SACVD_10_85	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04149	D9UNG3_9ACTO_9_66	100

Sequence based PCA Plot of the family - PF04149 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=11
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay