3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04148

Details:

PFam ID : PF04148

PFam Domain Description : Transmembrane adaptor Erv26

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 120

Average sequence length: 184

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04148	E6ZU38_9BASI_1_190	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04148	E1Z867_9CHLO_22_232	100

Sequence based PCA Plot of the family - PF04148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=51 Length=8
Motif3 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay