3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04147

Details:

PFam ID : PF04147

PFam Domain Description : Nop14-like family

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 204

Average sequence length: 587.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04147	Q5BQY2_SCHJA_30_93	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04147	E9CEP2_9EUKA_137_1206	100

Sequence based PCA Plot of the family - PF04147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=145 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay