3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04146

Details:

PFam ID : PF04146

PFam Domain Description : YT521-B-like domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 242

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04146	A5BZT5_VITVI_354_440	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04146	F0VF22_NEOCA_52_198	100

Sequence based PCA Plot of the family - PF04146 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=122 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay