3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04140

Details:

PFam ID : PF04140

PFam Domain Description : Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 410

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04140	B8P3P5_POSPM_112_224	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04140	B8P3P5_POSPM_112_224	100

Sequence based PCA Plot of the family - PF04140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=104 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay