3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04138

Details:

PFam ID : PF04138

PFam Domain Description : GtrA-like protein

Number of Sequence in 50% Dataset : 576

Number of Sequence in Full Dataset : 1567

Average sequence length: 117.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04138	Q2KDJ0_RHIEC_6_69	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04138	B2UCH6_RALPJ_71_136	100

Sequence based PCA Plot of the family - PF04138 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay