3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04137

Details:

PFam ID : PF04137

PFam Domain Description : Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 190

Average sequence length: 327.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04137	B6AC15_CRYMR_55_359	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04137	F2U0E2_9EUKA_199_616	100

Sequence based PCA Plot of the family - PF04137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay