3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04135

Details:

PFam ID : PF04135

PFam Domain Description : Nucleolar RNA-binding protein, Nop10p family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 178

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04135	C4QCA5_SCHMA_1_87	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04135	Q019V2_OSTTA_43_80	94.9

Sequence based PCA Plot of the family - PF04135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=20
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay