3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04133

Details:

PFam ID : PF04133

PFam Domain Description : Vacuolar protein sorting 55

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 131

Average sequence length: 116.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04133	C4QCA5_SCHMA_1_87	34.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04133	D2W2V9_NAEGR_11_141	100

Sequence based PCA Plot of the family - PF04133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay