3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04129

Details:

PFam ID : PF04129

PFam Domain Description : Vps52 / Sac2 family

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 213

Average sequence length: 353.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04129	Q5TJF2_CANFA_1_68	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04129	B9QBG5_TOXGO_479_734	100

Sequence based PCA Plot of the family - PF04129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=61 Length=8
Motif3 Start=143 Length=8
Motif4 Start=177 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay